"""
======================================
Toy Glucose Phosphorylation Experiment
======================================
This is a toy example referred to by the documentation.
"""
from vivarium.core.experiment import Experiment
from vivarium.compartments.injected_glc_phosphorylation import (
InjectedGlcPhosphorylation,
)
[docs]def glucose_phosphorylation_experiment(config=None):
if config is None:
config = {}
default_config = {
'injected_glc_phosphorylation': {},
'emitter': {
'type': 'timeseries',
},
'initial_state': {},
}
default_config.update(config)
config = default_config
compartment = InjectedGlcPhosphorylation(
config['injected_glc_phosphorylation'])
compartment_dict = compartment.generate()
experiment = Experiment({
'processes': compartment_dict['processes'],
'topology': compartment_dict['topology'],
'emitter': config['emitter'],
'initial_state': config['initial_state'],
})
return experiment