vivarium.analysis.analyze module

class vivarium.analysis.analyze.Analyzer(snapshots_config=None, tags_config=None, timeseries_config=None)[source]

Bases: object

static add_connection_args(parser)[source]
static format_data_for_colony_metrics(data)[source]
static format_data_for_snapshots(data, environment_config)[source]
static format_data_for_tags(data, environment_config)[source]
static get_data(args, experiment_id)[source]
plot(args)[source]
static plot_colony_metrics(data, out_dir)[source]
static plot_snapshots(data, environment_config, out_dir, settings)[source]
static plot_tags(data, environment_config, tagged_molecules, out_dir, settings)[source]
static plot_timeseries(data, out_dir, settings)[source]
run()[source]