vivarium.processes.Kremling2007_transport module

class vivarium.processes.Kremling2007_transport.Transport(initial_parameters=None)

Bases: vivarium.core.process.Process

defaults = {'parameters': {'K': 0.4, 'K1': 3000, 'K2': 2800, 'K3': 15000, 'KI': 0.000125, 'Keiiap': 12, 'Kg6p': 0.1, 'Kglc': 0.12, 'Kieiia': 5.0, 'Km_lac': 0.13, 'Y': 0.0001, 'Y1_sim': 6.2448e-05, 'Y2_sim': 0.0001, 'Y3_sim': 9.2421e-05, 'Y4_sim': 0.0001, 'k1': 1e-05, 'k2': 0.0001, 'k3': 0.00016, 'kb': 600, 'kd': 0.4, 'kg6p': 2800000.0, 'kgly': 28000.0, 'klac': 540000.0, 'km_pts': 130199.99999999999, 'kpdh': 5500.0, 'kpts': 186000.0, 'kptsup': 270000000.0, 'kpyk': 939000.0, 'ksyn': 3262.3, 'm': 1, 'mw1': 0.0002602, 'mw2': 0.0001802, 'mw3': 0.0003423, 'n': 2, 'x0': 0.1}, 'target_fluxes': ['glc__D_e', 'GLCpts', 'PPS', 'PYK']}

name = 'Kremling2007_transport'

next_update(timestep, states)

ports_schema()

vivarium.processes.Kremling2007_transport.kremling_figures(saved_state, out_dir='out')

vivarium.processes.Kremling2007_transport.plot_all_state(saved_state, out_dir='out')

vivarium.processes.Kremling2007_transport.test_transport(sim_time=10)