vivarium.processes package

Submodules

• vivarium.processes.Endres2006_chemoreceptor module
• vivarium.processes.Kremling2007_transport module
• vivarium.processes.Mears2014_flagella_activity module
• vivarium.processes.Vladimirov2008_motor module
• vivarium.processes.antibiotic_transport module
  • Simulate Antibiotic Import and Export
• vivarium.processes.cellular_potts module
• vivarium.processes.complexation module
• vivarium.processes.convenience_kinetics module
  • Convenience Kinetics
    • Bibliography
• vivarium.processes.death module
  • Model of Conditional Cell Death
    • Death Detector Classes
    • Death Process Classes
• vivarium.processes.degradation module
• vivarium.processes.derive_colony_shape module
  • Colony Shape Deriver
• vivarium.processes.derive_concentrations module
• vivarium.processes.derive_counts module
• vivarium.processes.derive_globals module
• vivarium.processes.diffusion_field module
  • Diffusion Field
• vivarium.processes.diffusion_network module
• vivarium.processes.division_volume module
• vivarium.processes.glucose_phosphorylation module
  • Toy Glucose Phosphorylation Process
• vivarium.processes.growth module
• vivarium.processes.growth_protein module
• vivarium.processes.injector module
  • Injector Process
• vivarium.processes.membrane_potential module
• vivarium.processes.meta_division module
• vivarium.processes.metabolism module
  • Metabolism Process
• vivarium.processes.minimal_expression module
• vivarium.processes.multibody_physics module
  • Multibody physics process
• vivarium.processes.nonspatial_environment module
• vivarium.processes.ode_expression module
  • Ordinary Differential Equation Expression Model
• vivarium.processes.static_field module
• vivarium.processes.template_process module
• vivarium.processes.timeline module
• vivarium.processes.toxin-antitoxin module
• vivarium.processes.transcription module
  • Stochastic Transcription
• vivarium.processes.translation module
  • Stochastic Translation
• vivarium.processes.transport_lookup module
• vivarium.processes.tree_mass module

Module contents