vivarium.processes.degradation module

class vivarium.processes.degradation.RnaDegradation(initial_parameters=None)[source]

Bases: vivarium.core.process.Process

defaults = {'catalytic_rates': {'endoRNAse': 0.1}, 'global_deriver_key': 'global_deriver', 'michaelis_constants': {'transcripts': {'endoRNAse': {}}}, 'sequences': {}, 'time_step': 1.0}
derivers()[source]
name = 'rna_degradation'
next_update(timestep, states)[source]
ports_schema()[source]
vivarium.processes.degradation.all_subkeys(d)[source]
vivarium.processes.degradation.kinetics(E, S, kcat, km)[source]
vivarium.processes.degradation.test_rna_degradation(end_time=10)[source]