vivarium.processes.transport_lookup module

class vivarium.processes.transport_lookup.TransportLookup(initial_parameters=None)[source]

Bases: vivarium.core.process.Process

flux_to_counts(fluxes, conversion)[source]
load_data()[source]

  • Loads all reactions, including locations for enzymes.

  • Separates out the transport reactions as an class dictionary

  • Makes mappings from molecule ids with location tags to external molecules without location tags

name = 'transport_lookup'
next_update(timestep, states)[source]
ports_schema()[source]